Google App Engine (Java) application has stopped working (all versions)

All versions of my app suddenly stopped working.

Similarly Unable to load multiple versions of AppEngine project and see HardDeadLineExceeded exceptions

From magazines:

Failed startup of context com.google.apphosting.utils.jetty.RuntimeAppEngineWebAppContext@7881db{/,/base/data/home/apps/[MY_APP]/946.357282374521459350}
com.google.apphosting.api.DeadlineExceededException: This request (d505d1e88148a047) started at 2012/03/08 04:17:00.300 UTC and was still executing at 2012/03/08 04:18:00.917 UTC.
    at java.util.zip.ZipFile.read(Native Method)
    at java.util.zip.ZipFile.access$1200(ZipFile.java:57)
    at java.util.zip.ZipFile$ZipFileInputStream.read(ZipFile.java:476)
    at java.util.zip.ZipFile$1.fill(ZipFile.java:259)
    at java.util.zip.InflaterInputStream.read(InflaterInputStream.java:158)
    at java.io.DataInputStream.readFully(DataInputStream.java:195)
    at java.util.jar.JarFile.hasClassPathAttribute(JarFile.java:482)
    at java.util.jar.JavaUtilJarAccessImpl.jarFileHasClassPathAttribute(JavaUtilJarAccessImpl.java:33)
    at sun.misc.URLClassPath$JarLoader.getClassPath(URLClassPath.java:1176)
    at sun.misc.URLClassPath.getLoader(URLClassPath.java:374)
    at sun.misc.URLClassPath.findResource(URLClassPath.java:201)
    at java.net.URLClassLoader$2.run(URLClassLoader.java:379)
    at java.security.AccessController.doPrivileged(Native Method)
    at java.net.URLClassLoader.findResource(URLClassLoader.java:376)
    at com.google.apphosting.runtime.security.UserClassLoader.findResource(UserClassLoader.java:723)
    at java.lang.ClassLoader.getResource(ClassLoader.java:977)
    at org.mortbay.resource.Resource.newSystemResource(Resource.java:203)
    at org.mortbay.jetty.webapp.WebXmlConfiguration.configureDefaults(WebXmlConfiguration.java:159)
    at org.mortbay.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1230)
    at org.mortbay.jetty.handler.ContextHandler.doStart(ContextHandler.java:517)
    at org.mortbay.jetty.webapp.WebAppContext.doStart(WebAppContext.java:467)
    at org.mortbay.component.AbstractLifeCycle.start(AbstractLifeCycle.java:50)
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.createHandler(AppVersionHandlerMap.java:202)
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.getHandler(AppVersionHandlerMap.java:171)
    at com.google.apphosting.runtime.jetty.JettyServletEngineAdapter.serviceRequest(JettyServletEngineAdapter.java:123)
    at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.run(JavaRuntime.java:422)
    at com.google.tracing.TraceContext$TraceContextRunnable.runInContext(TraceContext.java:449)
    at com.google.tracing.TraceContext$TraceContextRunnable$1.run(TraceContext.java:455)
    at com.google.tracing.TraceContext.runInContext(TraceContext.java:695)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContextNoUnref(TraceContext.java:333)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContext(TraceContext.java:325)
    at com.google.tracing.TraceContext$TraceContextRunnable.run(TraceContext.java:453)
    at com.google.apphosting.runtime.ThreadGroupPool$PoolEntry.run(ThreadGroupPool.java:251)
    at java.lang.Thread.run(Thread.java:679)
C 2012-03-07 23:18:01.030
Uncaught exception from servlet
javax.servlet.UnavailableException: Initialization failed.
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.createHandler(AppVersionHandlerMap.java:211)
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.getHandler(AppVersionHandlerMap.java:171)
    at com.google.apphosting.runtime.jetty.JettyServletEngineAdapter.serviceRequest(JettyServletEngineAdapter.java:123)
    at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.run(JavaRuntime.java:422)
    at com.google.tracing.TraceContext$TraceContextRunnable.runInContext(TraceContext.java:449)
    at com.google.tracing.TraceContext$TraceContextRunnable$1.run(TraceContext.java:455)
    at com.google.tracing.TraceContext.runInContext(TraceContext.java:695)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContextNoUnref(TraceContext.java:333)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContext(TraceContext.java:325)
    at com.google.tracing.TraceContext$TraceContextRunnable.run(TraceContext.java:453)
    at com.google.apphosting.runtime.ThreadGroupPool$PoolEntry.run(ThreadGroupPool.java:251)
    at java.lang.Thread.run(Thread.java:679)


Also, seen in browser:


Uncaught exception from servlet
javax.servlet.UnavailableException: Initialization failed.
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.createHandler(AppVersionHandlerMap.java:211)
    at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.getHandler(AppVersionHandlerMap.java:171)
    at com.google.apphosting.runtime.jetty.JettyServletEngineAdapter.serviceRequest(JettyServletEngineAdapter.java:123)
    at com.google.apphosting.runtime.JavaRuntime$RequestRunnable.run(JavaRuntime.java:422)
    at com.google.tracing.TraceContext$TraceContextRunnable.runInContext(TraceContext.java:449)
    at com.google.tracing.TraceContext$TraceContextRunnable$1.run(TraceContext.java:455)
    at com.google.tracing.TraceContext.runInContext(TraceContext.java:695)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContextNoUnref(TraceContext.java:333)
    at com.google.tracing.TraceContext$AbstractTraceContextCallback.runInInheritedContext(TraceContext.java:325)
    at com.google.tracing.TraceContext$TraceContextRunnable.run(TraceContext.java:453)
    at com.google.apphosting.runtime.ThreadGroupPool$PoolEntry.run(ThreadGroupPool.java:251)
    at java.lang.Thread.run(Thread.java:679)

      

        
        
        
      

    

Another error in the logs:

2012-03-08 12: 28: 26.248 com.google.inject.internal.util. $ FinalizableReferenceQueue $ SystemLoader loadFinalizer: It is not allowed to access the system class loader. I 2012-03-08 12: 28: 27.143 com.google.inject.internal.util. $ FinalizableReferenceQueue: Failed to start reference finalizer thread. Link cleaning will only occur when new links are created. java.lang.reflect.InvocationTargetException at com.google.appengine.runtime.Request.process-58eed86e9936f59f (Request.java) at sun.reflect.NativeMethodAccessorImpl.invoke0 (Native Method) at sun.reflect.NativeMethodetAorccess (Native Method) at sun.reflect.NativeMethodethodAvaccess : 57) at sun.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke (Method.java:43) at com.google.inject.internal.util.$ FinalizableReferenceQueue. (FinalizableReferenceQueue.java:124) at com.google.inject.internal.util. $ MapMaker $ QueueHolder. (MapMaker.java:787) at com.google.inject.internal.util. $ MapMaker $ WeakEntry. (MapMaker.java:946) at com.google.inject.internal.util. $ MapMaker $ Power $ 1.newEntry (MapMaker.java:312) at com.google.inject.internal.util. $ MapMaker $ StrategyImpl.newEntry (MapMaker.java:498) at com.google.inject.internal.util. $ MapMaker $ StrategyImpl.newEntry (MapMaker.java:419) at com.google.inject.internal.util. $ CustomConcurrentHashMap $ ComputingImpl.get (CustomConcurrentHashMap.java:2029) at com.google.inject.internal.Annotations $ AnnotationChecker.hasAnnotations (Annotations.java:116) at com.google.inject.internal.Annotations.isBindingAnnotavaation : 180) at com.google.inject.internal.Annotations.findBindingAnnotation (Annotations.java:161) at com.google.inject.internal.ProviderMethodsModule.getKey (ProviderMethodsModule.java:129) at com.google.inject.internal.ProviderMethodsModule.create:ProviderMethod (ProviderModule.createProviderMethod (ProviderModule) .inject.internal.ProviderMethodsModule.getProviderMethods (ProviderMethodsModule.java:83) at com.google.inject.internal.ProviderMethodsModule.configure (ProviderMethodsModule.java:73) at com.google.inject.spi.stall .java: 223) at com.google.inject.spi.Elements $ RecordingBinder.install (Elements.java:232) at com.google.inject.spi.Elements.getElements (Elements.java:101) at com.google. inject.internal.InjectorShell $ Builder.build (InjectorShell.java:133) at com.google.inject.internal.InternalInjectorCreator.build (InternalInjectorCreator.java:103) at com.google.inject.Guice.createInjector (Guice.java:95) at com.google.inject.Guice.createInjector (Guice.java:72) at com.google.inject.Guice.createInjector (Guice.java:62) at [MYAPP] .server.guice.GuiceInjectorFactory $ GuiceBerry.getInjector (GuiceInjectorFactory.java:20) at [MYAPP] .server.guice.GuiceInjectorFactory.getInjector (GuiceInjectorFactory.java:29) at com.google.inject.servlet.GutetextServutilized .java: 45) at org.mortbay.jetty.handler.ContextHandler.startContext (ContextHandler.java:548) at org.mortbay.jetty.servlet.Context.startContext (Context.java:136) at org.mortbay.jetty. webapp.WebAppContext.startContext (WebAppContext.java:1250) at org.mortbay.jetty.handler.ContextHandler.doStart (ContextHandler.java:517) at org.mortbay.jetty.webapp.WebAppContext.doStart (WebAppContext.doStart467) at org.mortbay.component.AbstractLifeCycle.start (AbstractLifeCycle.java:50) at com.google.tracing.TraceContext $ TraceContextRunnable.runInContext (TraceContext.java:449) at com.google.tracing.TraceteContext $. run (TraceContext.java:455) at com.google.tracing.TraceContext.runInContext (TraceContext.java:695) at com.google.tracing.TraceContext $ AbstractTraceContextCallback.runInInheritedContextNoUnref (Trace33Context.java .TraceContext $ AbstractTraceContextCallback.runInInheritedContext (TraceContext.java:325) at com.google.tracing.TraceContext $ TraceContextRunnable.run (TraceContext.java:453) at java.lang.Thread.run (Thread.java:67) is called by java.lang.Thread.run (Thread.java:67) .security.AccessControlException: Access Denied (java.lang.RuntimePermission modifyThreadGroup) at java.security.AccessControlContext.checkPermission (AccessControlContext.java:355) at java.security.AccessController.checkPermission (AccessController.java:567) at java.lang.SecurityManager.checkPermission (SecurityManager.java:549) at java.lang.ThreadGroup.checkAccess (ThreadGroup.java : 315) in java.lang.Thread.init (Thread.java:353) in java.lang.Thread. (Thread.java:479) at com.google.inject.internal.util. $ Finalizer. (Finalizer.java:92) at com.google.inject.internal.util. $ Finalizer.startFinalizer (Finalizer.java:81) ... 42 more C 2012-03-08 12: 28: 59.290 Do not disable exception from servlet com.google.apphosting.runtime.HardDeadlineExceededError: This request (58eed86e9936f59f) started in 2012 / 03/08 17: 27: 56.854 UTC and was still running at 2012/03/08 17: 28: 59.245 UTC. at java.io.FileInputStream.readBytes (native method) at java.io.FileInputStream.read (FileInputStream.java: 231) to java.io.BufferedInputStream.fill (BufferedInputStream.java:235) to java.io.BufferedInputStream.read1 (BufferedInputStream.java:275) to java.io.BufferedInputStream.read (BufferedInputStream.java:334) at com.google.inject.internal.asm. $ ClassReader.a (Unknown Source) at com.google.inject.internal.asm. $ ClassReader. (Unknown source) at com.google.inject.internal.util. $ LineNumbers. (LineNumbers.java:62) at com.google.inject.internal.util. $ StackTraceElements $ 1.apply (StackTraceElements.java:36) at com.google.inject.internal.util. $ StackTraceElements $ 1.apply (StackTraceElements.java:33) at com.google.inject.internal.util. $ MapMaker $ StrategyImpl.compute (MapMaker.java:549) at com.google.inject.internal.util. $ MapMaker $ StrategyImpl.compute (MapMaker.java:419) at com.google.inject.internal.util.$ CustomConcurrentHashMap $ ComputingImpl.get (CustomConcurrentHashMap.java:2041) at com.google.inject.internal.util. $ StackTraceElements.forMember (StackTraceElements.java:53) at com.google.inject.internal.Errors.formatSource (Errors.java:690) at com.google.inject.internal.Errors.format (Errors.java:555) at com.google.inject.ProvisionException.getMessage (ProvisionException.java:59) at java.lang.Throwable.getLocalizedMessage (Throwable.java:284) at java.lang.Throwable.toString (Throwable.java:360) at java.lang .String.valueOf (String.java:2838) at java.lang.StringBuffer.append (StringBuffer.java:236) at org.mortbay.component.AbstractLifeCycle.setFailed (AbstractLifeCycle.java:183) at org.mortbay.component. AbstractLifeCycle.start (AbstractLifeCycle.java:56) at org.mortbay.jetty.servlet.ServletHandler.initialize (ServletHandler.java:662) at org.mortbay.jetty.servlet.Context.startContext (Context.java:140) at org.mortbay.jetty.webapp.WebAppContext.startContext (WebAppContext.java:1250) at org.mortbay.jetty.handler.ContextHandler.doStart (Context java: 517) at org.mortbay.jetty.webapp.WebAppContext.doStart (WebAppContext.java:467) at org.mortbay.component.AbstractLifeCycle.start (AbstractLifeCycle.java:50) at com.google.apphosting.runtime.jetty .AppVersionHandlerMap.createHandler (AppVersionHandlerMap.java:202) at com.google.apphosting.runtime.jetty.AppVersionHandlerMap.getHandler (AppVersionHandlerMap.java:171) at com.google.apphosting.runettime.jetty. : 123) at com.google.apphosting.runtime.JavaRuntime $ RequestRunnable.run (JavaRuntime.java:422) at com.google.tracing.TraceContext $ TraceContextRunnable.runInContext (TraceContext.java:449) at com.google.tracing.TraceContext $ TraceContextRunnable $ 1.run (TraceContext.java:455) at com.google.tracing.TraceContext.runInContext (TraceContext.java:695) at com.google. tracing.TraceContext $ AbstractTraceContextCallback.runInInheritedContextNoUnref (TraceContext.java:333) at com.google.tracing.TraceContext $ AbstractTraceContextCallback.runInInheritedContext (TraceContext.java:325) at com.google.tracing.TraceContext $ AbstractTraceContextCallback.runInInheritedContext (TraceContext.java:325) at com.google.tracing. 453) at com.google.apphosting.runtime.ThreadGroupPool $ PoolEntry.run (ThreadGroupPool.java:251) at java.lang.Thread.run (Thread.java:679) I 2012-03-08 12: 28: 59.323 This the request started a new process for your application and thus caused your application code to load the first time. Thus,this request may take longer and use more CPU than a typical request for your application. W 2012-03-08 12: 28: 59.323 There was a problem with the process that was processing this request, causing it to exit. This will likely cause the new process to be used for the next request of your application. If you see this message frequently, you may be throwing exceptions while initializing your application. (Error code 104)(Error code 104)(Error code 104)