Eclipse GDB runs inside Chroot environment

Currently, I can push the source layer to a remote ARM board by running GDBserver on the board itself (Angstrom Linux) and running GDB inside my qemu environment using Chroot. Is there a way to do this in Eclipse (Eclipse itself is not inside the chroot environment)? I am currently using this as my development environment and it would be very helpful to be able to launch the debugger from there, and also to get the source access code and set breakpoints inside Eclipse.