Compile Java library (.jar) for Linux on Windows

I am using MATLAB library compiler to compile Java.jar on Windows. In my project, I have some pre-compiled mexw64 and mexa64 files. The problem is that the mexw64 files are automatically selected. How to choose mexa64 instead. Manually adding them to the project causes problems with the * mexa64.auth files:

Cannot find authentication file '/tmp/.mcrCache8.3/apply_0/brain/spm8/spm_existfile_mexa64.auth'