Rmarkdown error: no problem launching application from rstudio, error when accessing via web browser
I am developing an application on a linux R server that displays a report using rmarkdown.
1) When I run the application from Rstudio, the report displays and loads without issue.
2) When I access the application through a web browser, I get the error: "error in running command".
Note. The exact same files are used for 1 and 2. To be specific, the files used for 1 and 2 are not copies of the same files in different paths, the files used are in the same path.
The log reports the error as follows:
sh: / opt / shiny-server / ext / pandoc / pandoc: No such file or directory
System error (insert (shQuote (pandoc_path), "--version"), intern = TRUE):
error when running command
The code used to generate the rendering of the report is based on the Rstudio knitr example:
output$downloadReport <- downloadHandler(
filename = 'scorecard.docx'
,
content = function(file) {
src <- normalizePath('/appl/shiny/ali/helpers/scorecard.Rmd')
# temporarily switch to the temp dir, in case you do not have write
# permission to the current working directory
owd <- setwd(tempdir())
on.exit(setwd(owd))
file.copy(src, 'scorecard.Rmd')
library(rmarkdown)
out <- render('scorecard.Rmd', word_document())
file.rename(out, file)
}
I am running R version 3.1.2, Rstudio Version 0.99.442, rmarkdown 0.7, knitr_1.10.5, shiny_0.12.1
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