Codeigniter profiler not showing INSERT and UPDATE queries
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It seems like your INSERT queries are being processed after the profiler handler. Are you using AJAX perhaps? What are the log files? I haven't used them specifically for CodeIgniter. If you are using AJAX, the CodeIgniter Framework may not catch certain requests when we expect them.
I am assuming that INSERT queries are being executed, but if they are not, I will check this first.
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