Dump () in R not source () capable output contains "..."
I am trying to use dump () to save my analysis settings so that I can examine them in a text editor or reload them later. In my code, I am using the command
dump(ls(), settingsOutput, append=TRUE)
A file defined by `settingsOutput 'is created, but larger objects and locally defined functions are truncated. Here is an excerpt from such a file. Note that these files are usually in the order of several kilobytes.
createFilePrefix <-
function (runDesc, runID, restartNumber)
{
...
createRunDesc <-
function (genomeName, nGenes, nMix, mixDef, phiFlag)
{
...
datasetID <-
"02"
descriptionPartsList <-
c("genomeNameTest", "nGenesTest", "numMixTest", "mixDefTest",
"phiFlagTest", "runDescTest", "runIDTest", "restartNumberTest"
...
diffTime <-
structure(0.531, units = "hours", class = "difftime")
dissectObjectFileName <-
function (objectFileName)
{
...
divergence <-
0
For reference, here's one of the functions defined above
createFilePrefix <- function(runDesc, runID, restartNumber){
paste(runDesc, "_run-", runID, "_restartNumber-", restartNumber, sep="")
}
Right now, I go back and delete the problematic lines and then upload the files, but I would rather actually have the code that works as intended.
Can someone explain to me why I am getting this behavior and what to do to fix it?
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