BizTalk 2006 and BizTalk 2006 R2
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There is a table in BizTalkMgmtDB - BizTalkDBVersion. If v3.6.x is BTS2006R2, otherwise v3.5.x is BTS2006.
Or you can use the registry - in HKLM \ SOFTWARE \ Microsoft \ BizTalk Server \ 3.0, there is a ProductVersionKey. Again, the v3.6.x value tells us that this is BTS2006R2.
Note. Version numbers are in the .NET standard Major.minor.build.revision format, and build and revision are determined by SPs and cumulative updates.
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